Back on the Misty Isle

I am back on the beautiful Isle of Skye and finding out first-hand why it is known as the Misty Isle! The weather has been incredibly challenging so far this year with very few nice or dry days. But armed with a new waterproof camera cover the weather is not stopping me from collecting the photo ID data, and harbour seal pupping season is in full swing! Tourism is back up and running at Dunvegan Castle and the seals are very used to the boats heading out to see them many times a day once again.

Harbour seal mum and pup
Mum and pup watching the boat approach

Our first Mum this year was spotted on the 16th June with her brand new pup. Identified as Sk394, this female has been recorded every year during fieldwork. Last year she was observed at the start of the season but not on any subsequent surveys and this year is the first time that we have seen her with a pup. Once Sk394’s little one arrived, the pups started appearing steadily, a few more each day, and the skerries here have been full of lots of heavily pregnant seals looking ready to pop!

Harbour seal with new pup
Sk394 and her pup first spotted on 16th June

Another first for me this year was a pup born a few minutes before the boat rounded the corner. We quietly sat watching as the pup wriggled its way out of the birth sack with the help of its mother, whilst two large black-backed gulls feasted on the afterbirth. Due to the nature of the data collection here, a quick snapshot as you slowly coast past in the boat, it’s not often that you get the chance to see an actual birth so this was a very exciting moment.

Mum and pup with birth sack still attached
Newly born pup wriggling out of the birth sack

The biggest difference this year for me is how many of the seals I now immediately recognise and can name as I encounter them on the skerries. Having spent the whole of last year looking at their faces every day on the computer it definitely feels like I am meeting up with some old friends and will also make the identification process much faster and smoother once fieldwork is completed.

Recognising them has also led to some other interesting observations. Some of the seals are so predictable that each day before we set off I can anticipate where they will be hauled out at their ‘favourite’ spot. A particular island they favour and even a specific rock on that island on which they can regularly be found. Sk895 is a young male who moves between two very specific haulout locations. A small outer island at the edge of the survey area (shown below in the pictures) and a larger island directly across from this one. Over the last two years I have only ever seen him in one of these two locations, and he is not alone in his preference for a particular spot. There are many other seals who can be located just as predictably.

Harbour seal on his 'favourite rock on three separate days
Sk895 on his ‘favourite’ haulout spot in 2021 on two separate surveys and again this year

Another interesting observation is the differences in behaviour of individual seals to the boat approaching. Some of the seals are incredibly relaxed and indifferent to both the approach of the boat and the gazing tourists as they take photographs, and barely even lift their head to see what is happening. This can make my job of getting good photo ID shots a bit difficult as I only have a few moments to ideally capture them from the front and both left and right sides. In contrast, other seals are wary of the boat, despite the fact that it approaches them a number of times throughout the day. They will always keep a watchful eye on the boat until it departs. From the seals that I recognise, this behaviour appears to be relatively consistent with individual seals and affects the behaviour of the pups too as they tend to adopt the same reaction as their mother, learning from her behaviour.

Harbour seal mum and pup sleeping
Utterly relaxed mum-pup pair making my job of photo ID very difficult!

One of the most recognisable seals here in Loch Dunvegan is Sk105 or Morag. She has a very distinctive ‘orange’ head and is somewhat of a celebrity seal in the area. Unfortunately, she did not appear during the pupping season in 2021, therefore I have never actually seen her. So, when this female turned up heavily pregnant this year my initial thought was “Oooo Morag is back!” However, after comparing the photos of this seal to those of Morag in the catalogue, it appears that this is a new ‘orange’ seal!

Two harbour seals with distinctive 'orange' heads
New orange seal on left with her pup and Sk105 (Morag) on right

Just like Morag, she is very distinctive and stands out amongst all the other seals with her orange head making her instantly recognisable. However, this newly observed seal is a lighter shade of orange. She has been spotted regularly on surveys this season and has now given birth to a pup. I am reliably informed by a skipper who has been observing Morag for over 30 years now that I would not be able to miss her if she turned up and I remain hopeful that she will make an appearance before the end of the season so that I get a chance to see her. This newly recorded orange seal will be added to the catalogue with a new ID number later in the year.

All new seals in any given year that have not been matched to an existing seal in the catalogue, are given an individual ID number. However, due to the nature of the matching process, and the number of seals we currently have in the Skye catalogue, seals can sometimes be accidentally assigned two ID numbers resulting in what we call duplicates. Therefore, we are constantly looking to identify any duplicates and remove them from the catalogue. Once an ID number has been used it cannot be reused for another seal and consequently earlier in the year we reached a milestone with the Skye seal catalogue. Our new additions to the catalogue from the 2021 field season took us to over 1000 ID numbers assigned during the course of the project. Alongside the new orange seal, I wonder how many new seals I will record this year?!

Harbour seal
Sk1000 in the Skye catalogue

I am looking forward to another couple of weeks on the Misty Isle with lots more mum-pup pairs to record, many familiar faces to recognise and I am eternally optimistic that the weather will improve!

For now, goodbye from Skye,


Over the sea to Skye

(Blog post written by Sally Tapp)

It’s amazing how time flies when you’re on fieldwork!

I have been on Skye for three weeks now (although it feels like about five minutes) and have settled into a lovely routine.

Firstly, to introduce myself. My name is Sally Tapp and I graduated from SMRU with a Master’s in Marine Mammal Science in 2013. Since then, I have worked in the marine conservation sector on a variety of different projects. It all started with a traineeship at Cumbria Wildlife Trust where I had the opportunity to live on Walney Island, just off the coast of Barrow-in-Furness, and study the colony of grey seals that live there. Following this, I headed to Aberdeen and the RSPB’s Dolphinwatch project, focussing on the east coast population of bottlenose dolphins that can be seen regularly at Aberdeen harbour. After that, back down south of the border I worked for Lancashire Wildlife Trust’s Living Seas Team on a long-term project to secure the designation and management of Marine Conservation Zones around England and Wales, with the aim of protecting vulnerable marine species and habitats and halting any further decline in the condition of our marine environment. Before starting my new role here with the Harbour Seal Decline Project, I was based at the Dove Marine Laboratory in Cullercoats, working for Newcastle University as their Marine Education Officer.

Now to the interesting part…. The photo ID data collection here on Skye is all done from a small wooden boat run by Dunvegan Castle. During the summer months they run a highly popular seal trip around the inner skerries of Loch Dunvegan, giving tourists the chance to get up close to the harbour seals and see these beautiful animals hauled out on the seaweed, and relaxing in a way that only seals can!

This is an ideal platform from which to collect photo ID data and in previous years we have been able to join a seal trip when there is room on the boat and collect the photo ID data as it tours around the skerries. Tourists have had the opportunity to find out about the project and view the photo ID catalogue to identify some of the seals they can see whilst out on the loch. This has been invaluable, and we are grateful to Dunvegan Castle and their wonderful boat skippers for allowing us to do this.

Due to the Covid-19 pandemic, this season has been a little different and the boats are not running for the tourists yet. Therefore, each day depending on tide times I head over to Dunvegan and am treated to my own private seal tour. This means I have the chance to carefully and systematically photograph every seal that we find hauled out on the skerries. Unlike on Orkney, where John has a huge amount of kit to carry around, I just swing my camera around my neck, climb aboard the boat and away we go! I was a little nervous the first day we headed out in case I was swamped with seals, however, I was eased in gently as numbers were relatively low on my first few trips.

The seals here are very used to boats, particularly the Dunvegan boats, and are used to people passing by watching them. However, during the pandemic when the world shut down, the tourist boats here also stopped. This means that pups born last year (2020) have not had the same experience and the seals haven’t seen the boats for about a year and a half. Therefore, I was interested to see if this would affect their behaviour and how they would react to us approaching. For the first few surveys, the seals kept a careful eye on what we were doing, and they were clearly more nervous than they have been in previous years. This said, as the days have passed by, they are becoming more accustomed to us and are happy to remain hauled out.

The first week here was a bit frustrating as the weather was atrocious, with high winds cancelling a number of our trips. But by the second week the sun finally made an appearance and so did the first pup of the season. The pups arrive around mid-June each year like clockwork and this year’s first arrival was on Friday 18th June. Unfortunately, this year we can only go out on weekdays, so I was eagerly awaiting more pups on the Monday morning when I arrived at Dunvegan and I wasn’t disappointed. Many more pups had made an appearance over the weekend, the skerries were bustling with seals and the air was alive with the sound of mums calling for their pups and vice versa.

Sk558 and her new pup

The pups are born with their unique markings, so we can identify them from day one and watch them develop as the season continues. It’s nice to see very distinctive patterns in their pelage that will be useful in subsequent years to immediately know who we are looking at. This little pup born last week has a very identifiable star pattern on its forehead (I have nicknamed it Little Star) which will prove easily recognisable in the future.

Pup “Little star” with a clear star shaped patterb mark on its forehead. Easy to recognize!

We try to get photographs of mum-pup pairs whenever possible so that we can track the mothers through the years to see whether they produce a pup each year and, if possible to follow how long the pup stays associated with its mother during the pupping season. It is such a privilege to get to see the pups interacting with their mums and forming a bond. Watching them taking their first few swimming lessons is very special with mum constantly checking that her pup is doing well with a reassuring nuzzle.

Looking back at the numbers of seals on the skerries in previous years, numbers have appeared relatively low this year. According to the skippers, since the end of the 2019 season, the number of seals around Castle Dunvegan has seemed to them to be smaller. I am interested to see how this develops as the season continues and I will update you as the next few weeks progress.

If you would like to see more pictures of the Dunvegan seals and some of the beautiful land- and sea- scapes around the Isle of Skye then you can find me at

For now, it’s bye from Skye!


A very belated introduction, and a fieldwork update from John in Orkney!

(Blog written by John Dickens)

I find it very hard to believe that I’ve been in Orkney for almost 2 weeks now. The time has flown by with the seals keeping me very busy, especially over the past few days.

I’ll come back to the fieldwork update – first, a brief introduction. My name is John Dickens and I’ve been involved in seal and cetacean research for the past 6 years or so, having had the opportunity to work with Antarctic and subantarctic fur seals, elephant seals, leopard seals and killer whales on three very special Subantarctic islands. I studied marine biology at Rhodes University in South Africa and went on to do a masters degree in conservation biology at the University of Cape Town. I had my first experience of marine mammal research during a year working as a field assistant on Marion Island, one of the Subantarctic Prince Edward Islands belonging to South Africa. A large portion of my time on Marion was dedicated to collecting ID photos of killer whales, as well as monitoring fur seals and continuing a long running mark recapture study on southern elephant seals. I then started working for the British Antarctic Survey and ended up spending about 3 years on South Georgia. A year and half of that time was spent on Bird Island, where a major part of the job involved collecting ID photos of the leopard seals during the winter months. On South Georgia I also continued the long term monitoring of Antarctic fur seals, piloted the first UAV/drone monitoring project of seals and seabirds, and was involved with a number of penguin, albatross and petrel projects too.

The photo ID research that I am carrying out for the Harbour Seal Decline Project in Orkney is similar to photo ID work that I have done in the past. Individual animals have unique markings or patterns, with seals these are often easiest to spot* on their head. By taking photos of animals at study sites regularly and over the course of a number of years we can build up a catalogue of known individuals, learning more about pupping rates, survival rates and intra- and interspecies interactions.

Back to the fieldwork update – The 2021 season of harbour seal photo ID in Orkney is off to a good start! I’ve been out to our study sites on Burray and South Ronaldsay daily to take photo of the seals and have had some fantastic sightings during this time. It has taken a little while to learn the ropes, figuring out what to pack, the best access routes and how to approach the observation sites without causing any disturbance to the seals, but it is going well and each day gets easier. I’ve only had to walk back to the car from a study site once to pick up a forgotten piece of kit…

The first week was quite quiet with few seals around and spring tides inundating the skerries on which the seals usually haul out. The quieter time was beneficial as it gave me a chance to learn how best to set up the camera and scope that I am using for the fieldwork. The seals are incredibly skittish so it is necessary to keep far enough away, and try and be as discreet as possible to limit any disturbance. To collect ID photos from a safe distance I use a scope which paired with a DSLR camera allowing me to take high quality photographs from much a much greater distance than a normal camera and lens combination would allow.






The quiet times didn’t last for long, the first pup of the season was born about a week ago and since then there have been new pups born almost every day. Friday evening’s observation (18th June) was particularly special as I sat watching three pregnant seals give birth over the space of about an hour.

Or085 and her newborn pup before entering the water
Or133 and her new pup moments after giving birth
Or255 giving birth!

One of the females that gave birth that evening was Or085, she was also seen pupping by Monica during an observation in 2019. Only minutes old the pup was in the water and having its first swim. Pups are born with their unique markings so we will hopefully be able to keep track of these animals year on year.

Yesterday evening (20th of June) there were 5 pups harassing their mothers on the skerries with another 3 learning how to swim by following their mums around in the kelp. They are wonderful animals and I’m really enjoying having the chance to get to know them.

Or045 and her pup making nose to nose contact
Or085 and her pup taking a rest

Harbour seals have not been the only marine mammal to keep me company at the study sites, there are usually a number of grey seals hauled out alongside the harbours. In addition to the seals, a Risso’s dolphin swam past a few days ago and I even had a very long distance sighting of a pod of orca!

Risso’s dolphin near the Hope
Risso’s dolphin seen from Burray

For more photos from my time on Orkney, mostly wildlife with a few landscapes thrown in, find me at

All the best from beautiful Orkney, and happy midsummer!!


*sorry for the pun…

Missing 2020 fieldwork

We have been very quiet since our last post at the end of the 2019 season. Unfortunately our 2020 fieldwork had to be cancelled with the COVID-19 pandemic, which means we will have a one year gap in our time-series. It has been very strange not to pack up cameras and tripods and head to Orkney, Kintyre and Isle of Skye this summer. We have no idea which of the known seals have been there, or who has had pups this year! What a strange feeling!

Despite the lack of fieldwork and the general silence in the blog we have indeed been very busy behind doors, primarily processing and analysing data. We spent the autumn and winter of 2019 going through all the photographs collected during the summer of 2019, matching them to the catalogues of seals at each site and adding new seals if we could not recognize them.

Harbour seals in Loch Dunvegan in late July showing some of the pups born in 2019 (photo by Helen Hiley)

The pictures taken in Orkney were the quickest to be processed, for two main reasons. First, we have had the same person taking the photographs and identifying the seals over 4 years, and in the world of manual identification of seals, experience counts a lot! One ends up recognizing the seals in the field already, making the processing of photographs in the computer a much easier job. The other contributing factor is that the number of seals that we see every year in Orkney has been declining, a reflection of the continuous decline in numbers of harbour seals in this area. At the end of the day that means less seals to be identified…

Or012, photographed in July 2019 in Orkney. We have known this seal since 2015 (photo by Mònica Arso Civil)

The hardest of all our study sites is still Isle of Skye. Despite going out to take photographs less often than in Kintyre or Orkney, the number of seals hauling out in the skerries near Dunvegan Castle in Loch Dunvegan is so large that the task of identifying them is much more challenging. We have over 600 seals in the catalogue for Loch Dunvegan, way more than in any other area! That means that the chances of mistakenly identifying two seals as the same one or giving the same seal two different IDs are much higher. That is particularly the case for those seals with very pale pelages, such as the ones below. Luckily we have a super team working on it who have become very good at knowning these Loch Dunvegan seals.

Alongside the photo-ID processing we have also been analysing some of the other data collected over the last 4 years. We recently published a paper where we showed how to determine pregnancy in harbour seals based on the levels of progesterone in their blood and blubber. The study was led by Prof Ailsa Hall in collaboration with colleagues at the University of Aberdeen Lighthouse Field Station and was publised in the Jounal of General and Comparative Endocrinology. In a nutshell, we analysed blood and blubber samples taken sometime between February and May (so before harbour seals have their pups, which is around mid to end June), to look at the levels of progesterone. Progesterone is one of the hormones produced during pregnancy, when it can be found in much higher concentrations, especially towards the end of the pregnancy. So by looking at the levels of progesterone, we can estimate if a female is likely to be pregnant or not (similar to running a pregnancy test). Some of the females we sampled were also photographed during the following pupping season, which means we could see if they were indeed pregnant (although that is not always obvious) and/or if they gave birth to a pup. By putting those two pieces of information together and knowing the fate of some of the potential pregnancies, we could establish thresholds of progesterone concentrations above which harbour seals are pregnant. Using those thresholds we then calculated how many of the captured adult females were likely at each of the study sites (Orkney, Isle of Skye and Moray Firth). We found out that the proportion of pregnant adult females was high across sites (63%-100%) and were not statistically different from each other.

Or085 pregnant (see the extented round belly) (photo by Mònica Arso Civil)
Or085 checking on her new pup (photo by Mònica Arso Civil)

The team is working hard to finish off the Skye 2019 data and some other lose ends with the photographs. Once that is done we will start using the data to estimate birth and natural mortality rates of harbour seals at sites that have shown different population trajectories over the last couple of decades.

Keep tuned!

Goodbyes to Orkney

Last monday I said my goodbyes to Orkney, as I took the Pentalina ferry from St Margaret’s Hope to Gills Bay one last time. After 4 summers spent in Orkney collecting photo-ID data on the harbour seals in Widewall Bay and Burray, it was time for me to pack my bags and head down to St Andrews. This last season is not quite finished, but I have left in the capable hands of my colleague Emily, who will take over for what’s left of this month of July. By the end of it, most of the pups will be weaned and juveniles and adults will be ready to start or will already be well into their annual moult.

Beautiful morning for a sail to mainland…
The ferry happens to go past one of the monitored haulout sites… last opportunity to say goodbye to the seals!

The last day I went out to get data on my own was on a friday, and what a beautiful day that was! The sun was shining and it felt like proper summer! Luckily it was early enough in the day that it was still cool and not too hazy, otherwise it is really tricky to get photographs of the seals that are actually in focus! Another challenge of these hot and calm days, especially when the tides are not very big, is that the seals will generally not move AT ALL. And when I mean not at all, I mean a seal will be in the same position, belly up and not lifting her head up even once. They can be in the same position for the 3 hours one is observing and trying to get pictures. It is not very convenient for us but highly convenient for the seals, that’s for sure!

Cracking day in Widewall Bay
Or075 and her pup having a snooze. Check how calm the water is below them!

Really quiet days come with little disturbance from weather elements, which means any other sound will be heard by the seals and it has the potential to wake them up. On that day, there were some Eider ducklings at the haulout site in Widewall Bay, and any time they made some noise they managed to wake up a couple of sleeping seals, which got a proper startle!

Eider duck with her ducklings


That last day I managed to visit all three main sites, photographing a large proportion of the seals resting (yes, some of them were asleep and impossible to photograph). By this time in the season, the juveniles are looking very ready to moult, looking uniformly brown and feeling itchy… If it gets too hot but you don’t want to get into the water completely, you might as well just dip your head in…

Juvenile harbour seal cooling off by dipping its head in the water…

The pups that were born first are now about 4 weeks old, and probably close to being weaned. They have gone from being a bag of skin and bones with little blubber to big round balls of fat. The lactation period might seem short (about 24 days; Bowen et al. 1992, 2001) compared to other mammals, but it is highly efficient and intense, as harbour seals secrete large volumes of energy-dense milk with 40-60% fat. Female harbour seals do not have enough body energy stores to fast throughout the  lactation period. To make up for the energetic cost of lactation, females will forage during that time, starting with short foraging trips lasting only a few hours about a week after giving birth.

Or062 and her pup, also a female, looking very big by now…

Through this project we have been able to gather information on individual seals over 4 separate summers. This longitudinal individual data is key to figure out population dynamics questions, which is the same as saying we are trying to answer questions about what is causing the numbers of harbour seals to go up or down in different areas. Are there not enough pups being born? Are these pups surviving as one would expect for a seal? What about the juveniles or the adults? Or are there any differences between males and females? We might not have enough data to answer all these questions given the length of the study (4 summers is not much compared to how long seals live), and the limitations of following pups onto adulthood, but we are hoping to be able to answer some of them.

There are other interesting facts associated with the data we collect. We can see, for example, differences in how females succeed at pupping every summer. Some will pup earlier than others in the season, some will not pup in a given year, some will not manage to wean a healthy pup while others end up weaning pups that are bigger then the one-year-olds.

Or094 with a pup in 2016, 2017 and 2018, but on her own in 2019

As an example, below are two photographs of Or118 and her pup from this year. The time difference between the photographs is 3 weeks. And check how much bigger the pup is by then!

Or118 and pup on 21st June, about 2 days after being born
Or118 and pup on 13th July. Look at the difference in size in those 3 weeks!!!

Four summers of observing the same seals has other rewards, as one gets “to know” the different individuals. By this I mean not only learning to recognize them in the field but also noticing that different seals do different things, and these differences in behaviour sometimes repeat across years. Some seals seem to have favorite spots to haulout, as they will repeatedly be found in that elevated rock, day after day and year after year, like Or057 in the picture below. Different seals are more or less tolerant to having other seals nearby, and females might be more or less patient with approaching pups.

Or057 in one of her favourite rocks, year after year…

In a way that does help to collect data every summer because one can kind of predict what certain seals might do next. There are some behaviours that generally apply to all seals too. For example, seals do not like heavy rain (who would have thought?), and will slowly (or not so slowly) leave the haulout site and return to the water if there is too much rain. Also, seals will tend to follow a pattern of movements within the haulout site at different times of the tide, and depending on how close to neap or ebb tides it is in the cycle. When females come out of the water with a pup, there is a short window of opportunity to get the photographs done, as the female will position herself quickly for the pup to suckle but then will lay with her head down and thus will make it impossible to get a picture.

I am taking with me all of this knowledge and fieldwork memories, which I am sure will remain with me for a long time. Now, however, it is time for some office work to deal with photograph processing and analysis. Let the fun bit begin!

Written by Monica


Bowen, W.D., Oftedal, O.T., and Boness, D.J. 1992. Mass and en-ergy transfer during lactation in a small phocid, the harbor seal(Phoca vitulina). Physiol. Zool.65: 844–866

Bowen, W.D., Iverson, S.J., Boness, D.J., and Oftedal, O.T. 2001.Foraging effort, food intake and lactation performance depend onmaternal mass in a small phocid seal. Funct. Ecol.15: 325–334

Pupping season rapidly progressing in Orkney

Out of the three study sites (Kintyre, Isle of Skye and Orkney), Orkney is the one in which the pups arrive the earliest, normally by mid June. Consequently, it also tends to be the site in which most, if not all pups, will have been born sometime by the start of July. Because this is our 4th season in Orkney and I have been working on matching seals from this area for a few years, I do by now have a very good knowledge of the seals that are found at the monitored sites here. It also helps that the haulout sites themselves are not massive in numbers, making the catalogue of seals under 200 animals for this area. This is not the case in our study site in Isle of Skye, Loch Dunvegan, for which the catalogue currently holds over 500 seals.

Size of catalogues of identified seals in Kintyre, Orkney and Isle of Skye. The orange bars indicate the number of catalogued seals for each side (Front, Left and Right sides of the head), and the blue bars are those that might be new to the catalogue and are yet to be assigned a number if agreed these are indeed new individuals.

The advantage of recognizing the seals is that we can identify them on the spot as we collect the data in the field, which is very safisfying. Every photograph that gets taken in the field is subsequently entered in an excel data table, so that we can store the metadata associated with each photograph. Each photograph will be graded for its quality, and we will make a note if what we can see is the right, the left or the front side of the seal’s head. That is because the pattern will be different on each side, so technically we end up with three different catalogues.

We always try to get the left, front and right sides of each seal, as shown with Or118 here. It’s not always the case though!

We will also note whether the seal is associated with a pup or not, and whether we can see the pup in the photograph or if it is suckling. Other relevant information that will be noted is if we can see a seal is pregnant, if we can sex the individual or if there are any significant or unusual injuries.

Keeping track of who is at the haulout sites on a daily basis means we can monitor in situ not only who is present that season, but also which females are likely to be pregnant and which ones are having pups and when. The first pup arrived on June 12th in Widewall Bay (South Ronaldsay), belonging to female Or075. The last one was on July 1st, from Or026 (aka Pirate), who, coincidentally, was also the last female to pup last year.

Or075 with her pup on June 12th. This female was still pregnant on June 10th.
Or075 with her much bigger pup on July 7th
Or026 (aka Pirate) looking very pregnant on June 30th
Or026 with her pup on July 7th. Note that the pup has a very distinct white mark behind the left ear, which should make it easy to identify it through the season.

The pups are rapidly gaining weight with the fat-rich milk from their mothers. In just a couple of weeks from now most of the pups will be weaned, especially those born earlier in the season.

Milk moustache from Or062’s pup
Look at the size of these pups! Nothing like what they looked like when born.

As days go, the females will undertake foraging trips during lactation, to support its energetic costs. The pups will accompany them in many of those occasions, but they will also stay behind and wait for their return on shore. Some pups can be seen resting, while others will spend time in the water, or will be checking on other females and other pups, sometimes calling out. When the females return, they will look for their pups, checking on any sleeping pup around until they find theirs.

On July 8th, I spotted female Or007 approaching a haulout site from the water. She can be easily recognized from the distance because she has some scarring around the neck from some debris that got entangled around her neck sometime in the past. There is no debris left now, just a scar. This haulout site is pretty small, normally holding around 10 to 20 seals maximum. On arrival, Or007 first headed towards a mum pup pair, Or044 (aka “Butterfly”) and her pup, and checked on the pup.

Or007 checking on Or044’s pup… not her pup…

Not recognizing it as her pup, she then went on to check on another mum pup pair, this time Or135 and her pup. Wrong pup again… although the pup was quite interested and had intentions to follow this different seal into the water!

Then checking on Or135’s pup… wrong again!

Then she went onto checking a sleeping pup nearby and … hurray! Third time lucky as she finally found her pup, who was just snoozing, completely unaware of what was going on. After some nose-to-nose interaction, mum positioned herself so that the pup could suckle.

Or007 finally re-uniting with her pup!
Or007 with her pup suckling

And here is a short video of Or007 looking for her pup on that day:

The following day, July 8th, Or007 must have gone again on a foraging trip, as I spotted her pup on a nearby haulout site having a rest after checking the seals that were around.

Or007’s pup settling for a rest at the haulout site

For the next three weeks we will keep on monitoring the mum pup pairs at the haulout sites. A part from those, there are also juveniles, adult males and adult females that have not had a pup this year. The data we collect on them (i.e. whether they are present or not) will help us learn more about the mortality rates in different study sites, to see what might be behind the contrasting trajectories in harbour seal numbers in different areas of Scotland.

Written by Monica

The field season in Kintyre has begun!

So the field season is well underway in Kintyre! So far three weeks of surveys have been undertaken to photograph individual harbour seals utilising sites around the peninsula.

It’s off to a brilliant start, with lots of cloudy days which is actually the best weather for field work! Ideally, we would like a little bit of sun every now and then (it is summer after all!). However, cloudy days produce the best photographs as there is minimal glare and haze which can otherwise make photographs blurry. In addition, if a seal has recently hauled out, and the pelage is wet, on a sunny day the light reflecting off the wet coat can make it harder to get a clear photo of the pelage pattern for photo-ID.

A gorgeous harbour seal photographed on a calm day at Southend

So far we’ve had no pups yet, but we have multiple pregnant females at some of the haul out sites, and we’re expecting the arrival of pups very soon! We also have quite a few males around the haul out sites, with a few juveniles up to their usual antics. Juveniles can be seen ‘porpoising’, a form of play in which they jump out of the water like a harbour porpoise (I have yet to capture this on camera!). Juveniles are smaller than full adults, and can have a lighter coloured pelage. They also tend to be more playful in the water too.

A curious juvenile photographed at Southend

My favourite seal is ‘Goggles’, photographed below at Southend on 8th June. He is a beautiful male, and is named for his very distinctive pelage pattern. He posed very nicely on this day to get some wonderful, clear photographs of each side for photo-ID. He was seen again on 16th June, also at Southend, but this time you can see how the pelage can look slightly darker because it is wet. However, we can still identify that it is the same male based on the pattern of his spots.

Pictured above is Goggles, hauled out at Southend, and showing his left side with his distinctive ‘goggle’ pattern, and front side below.

This is Goggles on a different day sighting, this time he has a wet pelage, however is still identifiable from his unique spot pattern
It’s a tiring life being a seal; an adult male is photographed here at Yellow Rock.

Not seal-related, but we have had other stunning wildlife make some appearances too. So far this season in Kintyre, there have been three sightings of otters, including one of a mum and pup at Yellow Rock, and two sightings of a pair at Southend. In addition, there have been sightings of mergansers, shelducks, ospreys, lots of oystercatchers and the occasional sighting of the elusive caravan park cats!

I was very lucky to photograph these two beautiful otters feeding at Southend!

As well as the harbour seals, we also have Atlantic grey seals utilising the same haul out sites. The grey seals look quite different to the harbour seals up close. I always describe them as having more of a ‘labrador-like’ face, with a more prominent snout, compared to harbours with more of a ‘cat-like face’. Grey seals also have much larger spot patterns too, as you can see in the photographs.

A grey seal enjoying the sun! They have much larger spot patterns than harbour seals, and have a more pronounced snout.

We’re looking forward to the imminent arrival of pups soon, and hopefully we continue to have many more exciting wildlife sightings this season!

Abigail using a digiscope to take photographs of harbour seals at Muller South, one of our Kintyre haul out sites.

Written by Abi


Harbour seal birth

The last week has been pretty hectic in Orkney, with more females having their pups. In general I tend to see the pups once they are already born, and normally manage to miss the births. The main reason is that the haulout sites we monitor in Orkney are your typical haul out site in Scotland: a bit of the coast that gets exposed at low tide, covered in sea weed and rocks, rather than a sandy beach. The observation points we have chosen that get us close enough to the seals without disturbing them are on the ground level, so we do not always get a full view of a seal, as there is always a rock or bit of ground with seaweed in front.

A couple of weeks ago I was working on the afternoon and evening low tides, knowing that, at some point, I would have to switch to the early morning tide. I finally decided to do so on June 20th, setting my alarm to 5:40 am, which is always a bit painful when you’ve finished the previous day’s data collection around 8:30pm. However, I do prefer morning tides than the late day ones, as the light is much better. There is also a rewarding feeling when you have completed your data collection by 10am to be honest, and you still have a full day ahead of you.

The morning of June 20th was promising, with the perfect light (slight overcast rather than full sunshine) and a light breeze too, which keeps the midges away. I arrived at the site before 7am, and spotted a few seals on the first observation point. One of them was Or085, a female that we have known since the start of this project in 2016, and that we also tagged in 2017 with a telemetry tag. She looked very big and thought to myself it couldn’t be long until she pupped now.

Or085 (front)

Once I had taken photographs of these nearby seals I started taking pictures of those further away. As I was scanning the shore with the scope and camera, I catched a seal just giving birth, but of course, I was pretty far away… This pretty much summarizes what has happened over the last 5 years. I see a seal … and then I see a seal with a pup! In this case it was Or045. The pictures below are less than 30 minutes apart…

A pregnant Or045 resting at the haulout site…
… and less than 30 minutes later, with her brand new pup!

Later in the morning I moved to a second observation spot to photograph these more distant seals. As I was finishing off I saw that the first female, Or085, was hauling out straight ahead of me in a nice bit of seaweed that is accessible once the tide has come up quite a bit, and that, as far as I can tell from my observations, is a favorite to the seals on the right tides. I decided to stay around, as I could see Or085 behaving a bit different than usual: changing position quite often, as well as making some suspicious movements that looked a lot like contractions to me. So, after 5 summers of coming to Orkney to monitor the harbour seals during the pupping season, I finally managed to see a full birth, which was very exciting and incredibly interesting. The video below is a summary of that process. Be aware that it does show a seal giving birth. Once the pup was born, there was a lot of nose-to-nose interaction between the mum and the new pup, which is very important to set the bond for a mum-pup pair. The pup then suckled for a bit and, with the tide coming up, both mum and pup ended up in the water (although the pup needed some encouragement).


Or085 and her new pup
Suckling time for Or085’s new pup

Since June 20th, I have been going back to the monitored site, and have seen Or085 and pup together, which is great news. Because the pup already has its adult coat with pelage markings, I should be able to identify it at least within this season, and check for how long it stays associated to mum.

Or085 and pup seen on June 21st

Written by Monica

2019 pupping season

It doesn’t feel that long ago that I was saying my goodbyes to Orkney at the end of the pupping season last summer. Well, we are back now and actually already two weeks into our 4th field season of this project (well, 5th year of fieldwork, but 4th photo-identification data collection year!). There is always a sense of excitement the first day going back to the field sites after all these months. Since we left at the end of last July, these harbour seals have undergone an annual moult (around August), a mating season, and a whole autumn and winter of foraging in the North Sea waters, and for the females, also preparing to pup again this summer. It was thus nice to recognize some familiar faces, like Or008 and Or023, two females that are frequently seen in a small haulout site in Widewall Bay, in South Ronaldsay. I normally do not tend to photograph seals in the water, as it is more difficult to get good head profile photos, but these two were posing just perfectly for me!

Harbour seals tend to come back to the same haulout sites every summer for the pupping season. That alllows us to follow the same individuals over the years, recognizing them based on their unique pelage markings, and noting relevant information to answer our research questions. It is of course possible that we might see some seals only once in the entire summer, while others are seen on a daily basis. Not all seals follow the same pattern, but, in general, they tend to be at a haulout site at some point or another during the season. As long as we go out regularly to check on them, we should be able to photograph them and thus have a record of their presence! Sometimes, however, we might not see one or more seals at all. That could be because they are elsewhere, or we just do not manage to see them when they are around, or they have have died; the numbers of harbour seals in Orkney have been declining continuously at a rate of 10% each year since 2001. The last count in Orkney and the North coast was in August 2016, when 1,349 harbour seals were counted compared with 1,938 in 2013. Overall, the composite counts for the North Coast & Orkney Seal Management Unit (SMU) have declined from approximately 8800 in the mid-1990s to 1350 by 2016, representing an 85% decrease in what was the largest single SMU population in the UK. The counts for the Sanday Special Area of Conservation show a similar trend, with a step change between 2001 and 2006 and a continuing decline at 17.8% p.a. (95% CIs: 13.3, 22.0) since 2006. There is more detailed information on the counts and population trends of grey and harbour seal populations in the annual reports to the Special Committee On Seals (SCOS), which can be found in the SMRU website (see this link). By collecting this annual data on presence/absence of known seals and their associated pupping history we can learn about their survival and birth rates, and how these help explain the observed declines, increases or stable trends in different areas in Scotland.

August counts of harbour seals in Scotland, taken from the 2018 SCOS report. See

So far the weather in Orkney has been… well, Orkney weather. I’ve had dense fog, beautiful sunshine, incredibly strong wind, thuder and lightning, heavy rain and a gazilion midges. Despite that I’ve managed to get out more or less every day to check on the seals. The numbers have been increasing at the monitored sites, with more heavily pregnant females. Then on June 12th I saw the first pup! It was in Widewall Bay, where Or075 decided to haulout with her new pup as I was getting out of the car. Good timing!

Or075 with her pup on June 12th 2019 in Widewall Bay, South Ronaldsay

Since then there are at least another two pups in that same haulout site, from females Or007 and Or135. At another monitored site in Burray, as of yesterday 17th of June I have identified 4 pups, belonging to females Or024, Or025, Or065, and Or146. I am expecting to see a few more in the next week or so, at least by the looks of some of the females such as Or142… ready to pup!

Or007 with her 2019 pup. Check how dark is this pup compared to mum! (she is particularly pale too…)
Or024 and her pup
Or142 resting under the rain… look at that belly!

Written by Monica



This is a post I never thought I would have to write. Earlier this year we received the devastating news that Andy Law, one of our team members, had unexpectedly passed away. This came to an absolute shock to all of us that knew him. Andy was a much liked and respected member of the SMRU team; his enthusiasm for all nature related subject was contagious and his knowledge on the local (and not so local) wildlife was absolutely admirable.

Andy helping with SMRU fieldwork in Kylerhea

Andy joined the Harbour Seal Decline project from the start, by leading the exploratory trips around Isle of Skye and part of the Argyll coast back in the summer of 2015, to choose potential study sites to get data on harbour seal population demographics. He then went onto taking responsability for collecting the photo-identification data of harbour seals occurring at the study site in Loch Dunvegan (Isle of Skye), and then patiently and methodically processing the thousands of photographs collected. But Andy was known to the SMRU team way before that, as he had been collaborating with various projects occurring in Kylerhea waters in the past, right on his door step.

A mum-pup harbour seal pair from Loch Dunvegan. Photograph by Andy Law

Andy’s ability to recognize the different seals frequently seen in Loch Dunvegan was something else. He literally knew by eye a very large proportion of the around 500 catalogued seals in that area… Not only that, but he also managed to nickname most of them based on what the pelage pattern looked like! Andy was a very talented wildlife and landscape photographer, which was reflected in the photographs taken for the project. Despite being busy taking pictures as the boat would move fairly quickly past the hauled out seals, Andy would still find the time to chat to those lucky ones happening to be in the same wee boat with him, answering all the seal or other wildlife questions they had.

Harbour seal pup from Loch Dunvegan. Photograph by Andy Law
Curious harbour seal in the water. Photograph by Andy Law

Andy is and will be truly missed by all of us that were lucky enough to cross paths with him. Our thoughts are with Andy’s wife Debbie and his kids, Hamish, Isabelle and Madeleine.

Post written by Monica.